User contributions
Jump to navigation
Jump to search
- 13:00, 28 June 2011 diff hist +1,848 N Using the Grid/Grid information Created page with "In order to do your work on the grid you may need to have some information about which services your VO is allowed to use. For this purpose the EGEE infrastructure has an..." current
- 12:59, 28 June 2011 diff hist +414 N Data Management/Common errors Created page with "==Error Host unknown UNUSED== When using any of the lfc-* commands, you get this error: $ lfc-ls /grid send2nsd: NS009 - fatal configuration error: Host unknown: UNUSED /gri..." current
- 12:59, 28 June 2011 diff hist +2,193 N Using the Grid/Vbrowser quickstart Created page with "== Intro == In the virtual laboratory for e-science (VL-e) project, a VL-e toolkit has been developed. Background an more detailed information can be found on the [[#Links | vbr..." current
- 12:58, 28 June 2011 diff hist +1,777 N Using the Grid/Troubleshooting lfc entries Created page with "The logical file catalog is a place where you register files, so you can find their replicas that a physically stored on a storage element. If the physical storage is removed or..." current
- 12:58, 28 June 2011 diff hist +993 N Using the Grid/Replication Created page with "*Problem: You want to replicate a file to all the existing storage elements *Solution: Use the following script. *Precondition: You must have set LFC_HOST to lfc.grid.sara.nl an..." current
- 12:57, 28 June 2011 diff hist +2,394 N Using the Grid/Recursively copy files Created page with "Ricardo Bruno has developed three 'tools' to recursively copy (and register) from a User Interface onto a Storage Element and vice versa. A corresponding deletion tool is availab..." current
- 12:57, 28 June 2011 diff hist +3,400 N Access Control Lists Created page with "The Logical File Catalogue (LFC) allows you to attach to a file or directory an access control list (ACL). This is a list of permissions which specify who is allowed to access or..." current
- 12:57, 28 June 2011 diff hist +9,238 N Using the Grid/Grid storage Created page with "__TOC__ == Grid Storage Illustration == thumb|none|600px|Illustration of grid storage == Intro == Each cluster on the Grid is equipped with a [..." current
- 12:56, 28 June 2011 diff hist 0 N File:Surlturllfnguid.png current
- 12:55, 28 June 2011 diff hist +127 N Category:Grid Created page with "All pages in this category have to do with the BiG Grid infrastructure supported and operated by SARA and the BiG Grid partners" current
- 12:54, 28 June 2011 diff hist +1,814 N Installing software Created page with "== Installing software == *Problem: you need to run software which should be installed *Solution: Several solutions === Loading modules === If you need software that needs to b..." current
- 12:54, 28 June 2011 diff hist +1,459 N Using the Grid/Freesurfer Created page with "== Freesurfer == FreeSurfer is a set of automated tools for reconstruction of the brain’s cortical surface from structural MRI data, and overlay of functional MRI data onto th..." current
- 12:54, 28 June 2011 diff hist +2,381 N Using the Grid/Python2.6.4 Created page with "== Introduction == On the local Grid clusters and the central clusters at SARA, Nikhef and Philips Python 2.6.4 is installed for the lsgrid VO. To find out the which queues are ..." current
- 12:53, 28 June 2011 diff hist +3,070 N Using the Grid/Loading Modules Created page with "== Intro == "The VL-e Proof-of-Concept software distribution is a collection of tools for e-science on the grid, especially for use in the VL-e project. This collection is compo..." current
- 12:52, 28 June 2011 diff hist -69 Using the Grid
- 12:51, 28 June 2011 diff hist +5,243 N Using the Grid/Lsg-matlab Created page with "== Intro == Yes, it is possible to use matlab on the grid. This page explains how to get set up on the Lifescience Grid. In summary, the way to do this is to compile your matla..." current
- 12:50, 28 June 2011 diff hist +253 N Template:Todo Created page with "{| width=100% style="border: 3px solid blue;" | align=center | '''This page has been marked as ''Todo'', which means it needs serious work.<br/>Please feel free to add to this pa..." current
- 12:50, 28 June 2011 diff hist +3,866 N Using the Grid/Job Advanced MPI script Created page with "{{Todo}} =MPI Job= ==Introduction== MPI jobs on the Grid are slightly different. They will run on only one site and you can request a number of nodes per job. On the lifescience ..." current
- 12:48, 28 June 2011 diff hist +34 N File:PerlTopos.tgz (Perl modules for accessing ToPoS) current
- 12:46, 28 June 2011 diff hist +12,937 N PerlToPoS Created page with "= Introduction = PerlToPoS is a ToPoS client library written in Perl. The library has no dependencies other than those found on all grid nodes, so including the two modules 'Top..." current
- 12:45, 28 June 2011 diff hist +7,003 N Using the Grid/ToPoS Created page with "==ToPoS - A token Pool Server for Pilot Jobs == When you have tens, hundreds of jobs that you submit to the Grid you may find yourself writing software which checks the status o..." current
- 12:40, 28 June 2011 diff hist +2,165 N Parametric jobs Created page with "A parametric job causes a set of jobs to be generated from one JDL file. This is invaluable in cases where many similar (but not identical) jobs must be run. This is achieved by ..." current
- 12:39, 28 June 2011 diff hist +5,517 N Job collections Created page with "__FORCETOC__ When you have a large number of jobs to submit we strongly advise you to use job collections or parametric jobs. This will reduce the overhead fo..." current
- 12:39, 28 June 2011 diff hist +6,860 N Using the Grid/Large data job Created page with "The InputSandbox and OutputSandbox attributes in the JDL file are the basic way to move files to and from the User Interface (UI) and the Worker Node (WN). However, large..." current
- 12:38, 28 June 2011 diff hist +1,702 N Using the Grid/Long lived jobs Created page with "{{NOTE|We advice you to use the following workaround: <pre> voms-proxy-init --voms lsgrid --valid 168:00 </pre> This will create a voms proxy which is valid for 168 hours. }} ..." current
- 12:38, 28 June 2011 diff hist +1,485 N Using the Grid/Job requirements Created page with "*Problem: you want to specify conditions or constraints on the machines which execute your job. *Solution: use the Requirements attribute in your JDL description. If you have jo..." current
- 12:37, 28 June 2011 diff hist +2,759 N Using the Grid/Job binary execution Created page with "{{Todo}} *Problem: you want to execute your own binary program on the grid. *Solution: use a script to execute your program and use JDL to send your program with your job W..." current
- 12:36, 28 June 2011 diff hist +2,838 N Using the Grid/Job script execution Created page with "=Introduction= In this example you will create a small executable script and run it on the Grid. You can execute any unix command in this script. However, remember that your home..." current
- 12:36, 28 June 2011 diff hist +473 N Using the Grid/Job basic summary Created page with "This is a short overview of the commands needed to handle simple jobs: '''To submit jobs using your delegated credentials:''' glite-wms-job-submit -d $USER -o myjobs job.jdl ''..." current
- 12:35, 28 June 2011 diff hist +1,758 N Using the Grid/Job cancel Created page with "*Problem: you want to cancel one or more jobs that you just submitted *Solution use ''glite-wms-job-cancel'' In order to cancel one or more of the [[Using the Grid/Job submissio..." current
- 12:35, 28 June 2011 diff hist +2,827 N Using the Grid/Job output Created page with "*Problem: you want to get the output of your job. *Solution: Use ''glite-wms-job-output'' *First: Your job must be succesfully completed. See in [[Using the Grid/Job status|"Job ..." current
- 12:34, 28 June 2011 diff hist +2,659 N Using the Grid/Job status Created page with "category:Job submission *Problem: You want to know the status of the jobs you have submitted. *Solution: Use ''glite-wms-job-status''. *First: [[Using the Grid/Job submission..." current
- 12:34, 28 June 2011 diff hist +5,297 N Using the Grid/Job submission Created page with "This page shows how to create and submit a simple job to the grid using the WMS. This job involves no large input or output files. Interacting with the WMS is done using the g..." current
- 12:33, 28 June 2011 diff hist +2,800 N Using the Grid/Credential delegation Created page with "'''Credential delegation''' *Problem: Before job submission you may want to delegate your credentials to the Workload Management System (WMS). This can speed up multiple job sub..." current
- 12:32, 28 June 2011 diff hist +533 N Template:NavBar Created page with "<noinclude> This template expects 3 parameters: # previous page # index # next page For example: <nowiki>{{Using the Grid/NavBar|Previous Page|Contents|Next Page}}</nowiki> </..." current
- 12:31, 28 June 2011 diff hist +278 N Using the Grid/Proxy server Created page with "{{NavBar|VOMS proxy||Credential delegation}} This stores a proxy certificate in the proxy server where it will issue new proxy certificates in your name for a week. myproxy-ini..." current
- 12:30, 28 June 2011 diff hist +3,551 N Using the Grid/VOMS proxy Created page with "{{NavBar|Job startGridSession||Proxy server}} In order to use Grid facilities, you have to create a proxy. A proxy is a special kind of certificate that enables you to use Grid f..." current
- 12:29, 28 June 2011 diff hist +2,506 N Using the Grid/Job startGridSession Created page with "= Starting a gridsession = The easiest way to start a session on the LifeScience Grid is to use the script "startGridSession <VO Name>". This script will: # generate a proxy ..." current
- 12:29, 28 June 2011 diff hist +3,900 N G-eclipse Created page with "G-eclipse is a plugin for the [http://www.eclipse.org/ eclipse] IDE. It offers an environment in which you can submit jobs, copy files to and from the Grid, create simple workflo..." current
- 12:28, 28 June 2011 diff hist +688 N Template:NOTE Created page with "{| class="notice notice-note" style="background: #f2fff2; border: solid 1px #bfffbf; padding: 0.5em; width: 95%; margin: auto; vertical-align: top;" | '''{{{2|NOTE}}}:''' {{{1|..." current
- 12:26, 28 June 2011 diff hist +2,766 N Using the Grid/VO membership Created page with "In order to use the grid, you need to be a member of a Virtual Organisation (VO). The VO that is most suitable for you depends on the specific research a..." current
- 12:26, 28 June 2011 diff hist +4,953 N Using the Grid/Browser certificates Created page with "{{Todo}} == Browser installed certificate == For some Grid-services, like registering for a Virtual Organization (VO), you will need to install your Grid Certificate..." current
- 12:24, 28 June 2011 diff hist +4,927 N Using the Grid/Installing your certificate Created page with "== Intro == Once you have a requested a certificate you will need to install it on the user interface machine; this entails copying it to the .globus directory of your user inte..." current
- 12:24, 28 June 2011 diff hist +2,017 N Using the Grid/Getting a Grid certificate Created page with "Grid certificates are supplied by a Certification Authority (CA). In the Netherlands, Grid users need to get their certificate from the Dutchgrid CA run by [http://www.ni..." current
- 12:23, 28 June 2011 diff hist +1,877 N Using the Grid/Needed tools Created page with "=Preliminaries= To use the Grid you will need to connect to it. One way is to log in on a machine which makes the Grid infrastructure available. Such a machine is called a [[Use..." current
- 12:23, 28 June 2011 diff hist +3,061 N Using the Grid/Access introduction Created page with "People affiliated with Dutch universities and institutes are eligible for using the NL Grid infrastructure; See http://www.biggrid.nl/getting-involved/forms/ for more informatio..." current
- 12:21, 28 June 2011 diff hist +5,065 N Using the Grid Created page with "{{NOTE|Help us making these pages even better by sending your suggestions, links, documentation requests to: [mailto:grid.support@sara.nl grid support]}} __TOC__ = Getting Acce..."
- 11:18, 13 January 2011 diff hist +53 EBioGrid
- 11:16, 13 January 2011 diff hist +400 EBioGrid
- 11:08, 13 January 2011 diff hist +1,927 N EBioGrid Created page with "= eBioGrid introduction = eBiogrid is part of the Big Grid project, dedicated to the Life Sciences in The Netherlands. It is the portal for all Life Scientists who want to make ..."