CSC Ntuple production

Setting up Grid tools

This wiki describes how to set things up for ntuple production on the Grid. You need a Grid certificate [1] and some patience ;-)

Two tips:
• use voms-proxy-init instead of grid-proxy-init
• use bash for shell scripts

GridTools

Wouter wrote some very nice tools to submit/retrieve jobs from the Grid. They can be obtained from the Nikhef CVS:

cvs -d /project/atlas/cvs co GridTools

The GridTools package contains a few shell scripts:

dmgr

to manage datasets on the Grid

gpm

to set up packages on the SE for Grid jobs (to prevent jobs sizes > input sandbox)

gridmgr

main tool to manage Grid jobs (submit/retrieve/cancel/monitor)

gridinfo

a funny tool (lcg-infosites seems more useful)

jobmgr

to define Grid jobs (with the possibility to run them locally for testing)

dmgr and gpm possibly need to be adjusted:

LFC_HOST = lfc03.nikhef.nl
GRID_SE  = tbn18.nikhef.nl

GridModules

GridModules are packages which will be installed in /grid/atlas/users/${USER}/gpm. These packages reside on the SE (tbn18.nikhef.nl) and can be used for jobs. This prevents submitting (too) large jobs, note that there is a limit on the input sandbox of ~ 20-50 MB.

GridModules are available from CVS:

cvs -d /project/atlas/cvs co GridModules

A few examples of modules are present (interesting study material).

make_package

With this tool, a directory is tarred and stored on the SE. Note that the file ~/.gpmrc keeps track of which modules have been installed. When running jobs locally, it will use the locally available package instead of the one installed on the SE. Be careful not to include the slash '/' when making the package!

DataManager

This package is used to copy/move/delete and define datasets on the SE. You will definitely need this package. But before doing a make_package DataManager edit DataManager/run to set LFC_HOST and GRID_SE to the desired addresses.

AtlasRelease

To use the Athena software on the the Grid, the desired release has to be set up. It actually contains only one file: setup.sh and it's similar to the setup script you need to do when setting up Athen locally. (A part of this script is actually to setup Athena locally as you can also run/test jobs locally). A few changes have taken place since release 12, my 'AtlasRelease12.0.6/setup.sh':

#!/bin/sh
#
# Setup the environment for ATLAS release 12.0.6
#
# gossie@nikhef.nl
#
LOCAL_AREA=/data/atlas/offline/12.0.6

# --- Clear command line to avoid CMT confusion ---
set -

if [ "$VO_ATLAS_SW_DIR" != "" ] ; then

  # --- Follow the GRID approach ---
  echo "Setting up ATLAS release 12.0.6 from VO_ATLAS_SW_DIR=$VO_ATLAS_SW_DIR"
  . $VO_ATLAS_SW_DIR/software/12.0.6/setup.sh
  . ${SITEROOT}/AtlasOffline/12.0.6/AtlasOfflineRunTime/cmt/setup.sh
  CMTPATH="${PWD}:${CMTPATH}"

elif [ -d $LOCAL_AREA ] ; then

  # --- Follow the local approach ---
  echo "Setting up ATLAS release 12.0.6 from LOCAL_AREA=$LOCAL_AREA"
  . $LOCAL_AREA/setup.sh
  . ${SITEROOT}/AtlasOffline/12.0.6/AtlasOfflineRunTime/cmt/setup.sh
  CMTPATH="${PWD}:${CMTPATH}"

else

  # --- ERROR: Don't know where release is!
  echo "ERROR setting up ATLAS release 12.0.6, cannot find release"
  echo "Release_12.0.6_Not_Found" > errorcode


fi

Note that release 12.0.7 is the final release of the 12 series (but it is not installed on all Grid machines yet)

TopView module

http://atlas-computing.web.cern.ch/atlas-computing/links/kitsDirectory/PAT/EventView/

wget http://atlas-computing.web.cern.ch/atlas-computing/links/kitsDirectory/PAT/EventView/EventView-12.0.6.8.tar.gz

strip unnescessary files InstallArea, PhysicsAnalysis Little complication: if incorrect version is in package. Compile libraries locally and copy them to InstallArea. tar cvzf EventView-12.0.6.8_nikhef.tar.gz EVTags-12.0.6.8/ check run scripts in module (adjust version numbers) make_package TopViewAODtoNtuple-00-12-13-03