CTii

CTii: Cell Tomography Intuitive Interface    (Souley Madougou, Ammar Benabdelkader)

CTII is a Java GUI application which aims at facilitating the tasks of scientists performing the omnimatch 3D template matching experimentations.

Acknowledgment:

This work was carried out in the context of the BiG Grid project, with financial support from the Netherlands Organization for Scientific Research (NWO).

The work, described in this document, is developed in collaboration with 3DEM groups at the university of Utrecht (UU) and Leiden University Medical Center (LUMC).

Introduction

1. Cell Tomography Intuitive Interface (CTII) is a Java GUI application which aims at facilitating the tasks of scientists performing the omnimatch 3D template matching experimentations [lebbink 2007 ]. In addition to the main processing component, CTII also provide two other components for pre/post processing of the input/output electro microscopy files. Within the current version of the document, we only focus on the main processing component (3D template matching).

1. From the usage point of view, CTII is very sensitive, since it involves the set-up of a number of sensible parameters whose adjustments require appropriate expertise and skill in the application domain.