AMA on Stoomboot 14 2 22
Running at Nikhef on SARA ESDs
Below is a (personal) recipe to run on ESDs at Nikhef. For now, it runs when logged on interactively to Stoomboot. Submitting a job to the Stoomboot batch is still being validated.
From your local desktop log in to Stoomboot:
qsub -X -I -q qlong
Go to your working area and make a working directory
bash cd /project/atlas/users/egge/testarea/ mkdir twiki cd twiki mkdir 14.2.22
Create a requirements file, for example
set CMTSITE STANDALONE
set SITEROOT /data/atlas/offline/14.2.22
macro ATLAS_TEST_AREA /project/atlas/users/egge/testarea/twiki
macro ATLAS_DIST_AREA ${SITEROOT}
macro SITE_PROJECT_AREA ${SITEROOT}
macro EXTERNAL_PROJECT_AREA ${SITEROOT}
apply_tag opt
apply_tag setup
apply_tag simpleTest
apply_tag 14.2.22
apply_tag 32
apply_tag runtime
use AtlasLogin AtlasLogin-* $(ATLAS_DIST_AREA)
set CMTCONFIG i686-slc4-gcc34-opt
Then
source /data/atlas/offline/14.2.22/CMT/v1r20p20080222/mgr/setup.sh cmt config
The following two lines should be done every next time to set up 14.2.22
cd /project/atlas/users/egge/testarea/twiki/14.2.22/ source setup.sh
To be able to checkout AMA from CERN
/usr/kerberos/bin/kinit -5 egge@CERN.CH
Then actually checkout AMA
cmt co -r AMACore-00-00-02-01 PhysicsAnalysis/AnalysisCommon/AMA/AMACore cmt co -r AMAAthena-00-00-07 PhysicsAnalysis/AnalysisCommon/AMA/AMAAthena
and compile
cd PhysicsAnalysis/AnalysisCommon/AMA/AMAAthena/cmt cmt br gmake
In ANOTHER shell: set up dq2
source /project/atlas/nikhef/dq2/dq2_setup.sh.NIKHEF voms-proxy-init -voms atlas
Check if all is ok with
voms-proxy-info -all
To see what SARA destinations exist
dq2-destinations | grep "SARA"
To my knowledge SARA-MATRIX_DATADISK is the one to use (experts, please comment). To see the available (complete) datasets on SARA-MATRIX_DATADISK
dq2-list-dataset-site -c SARA-MATRIX_DATADISK
Let's take "data08_cosmag.00090721.physics_MBTS_BCM_LUCID.recon.ESD.o4_f70" as an example
cd /project/atlas/users/egge/testarea/twiki/14.2.22/PhysicsAnalysis/AnalysisCommon/AMA/AMAAthena/ define_dq2_sample -n cosmag90721 data08_cosmag.00090721.physics_MBTS_BCM_LUCID.recon.ESD.o4_f70 SARA-MATRIX_DATADISK
BACK in Stoomboot shell. Also setup Grid here
cd /project/atlas/users/egge/testarea/twiki/14.2.22/PhysicsAnalysis/AnalysisCommon/AMA/AMAAthena/ source /project/atlas/nikhef/dq2/dq2_setup.sh.NIKHEF voms-proxy-init -voms atlas
The warning "bash: /afs/cern.ch/atlas/offline/external/GRID/ddm/DQ2Clients/latest/setup.sh: No such file or directory" seems to be harmless.
AFTER setting up Grid on Stoomboot ALWAYS do
unset PYTHONPATH source /project/atlas/users/egge/testarea/twiki/setup.sh export TMPDIR=/tmpdir
To make sure you have correct Database settings please do
cp /project/atlas/users/egge/testarea/14.2.22/PhysicsAnalysis/AnalysisCommon/AMA/AMAAthena/setupNikhefDB.sh . source setupNikhefDB.sh
Then, modify the following in "share/AMAAthena_jobOptionsESD.py"
EvtMax = 1000 sampleFile = "samples/cosmag90721.def" # File with input collections
Then copy "share/input_FileStagerRFCP" to "share/input_FileStager.py" and implement the following in "share/input_FileStager.py"
#stagetool.CpCommand = "rfcp" #stagetool.CpArguments = [] #stagetool.OutfilePrefix = "" stagetool.checkGridProxy = False ... svcMgr.EventSelector.SkipBadFiles = True
Then all should be ready to run the job
cd /project/atlas/users/egge/testarea/twiki/14.2.22/PhysicsAnalysis/AnalysisCommon/AMA/AMAAthena athena -s share/AMAAthena_jobOptionsESD.py